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SRX11512735: PacBio HiFi sequencing of Potato cultivar Otava
1 PACBIO_SMRT (Sequel II) run: 7M spots, 102.2G bases, 59.9Gb downloads

Design: PacBio HiFi sequencing of Potato cultivar Otava for genome assembly
Submitted by: Max Planck Institute for Plant Breeding Research
Study: Chromosome-scale, haplotype-resolved genome assembly of a tetraploid potato cultivar
show Abstracthide Abstract
Potato is the most important tuber crop in the world. However, its highly heterozygous and tetraploid genome is a burden for breeding-based improvement, which is reinforced by the lack of haplotype-resolved genome assemblies. Here, we report the 3.1 Gb haplotype-resolved, chromosome-scale assembly of the tetraploid potato cultivar, Ovata, at a haplotyping accuracy of 99.6%, which was achieved by coupling PacBio long read sequencing (HiFi), 700+ single-gamete nuclei sequencing and Hi-C sequencing.
Sample: Potato cultivar Otava leaf sample
SAMN20326207 • SRS9543548 • All experiments • All runs
Library:
Name: 4396_A
Instrument: Sequel II
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 7M spots, 102.2G bases, 59.9Gb
Run# of Spots# of BasesSizePublished
SRR152062317,043,689102.2G59.9Gb2021-09-30

ID:
15424654

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